Distribution and accumulation of PVM and PVY,PVX in infected potato plants

The ability of PVM, PVY and PVX viruses and their progeny to distribute themselves and accumulate in primary infected potato plants by mono‐ and mixed infections is analysed. It is shown, that the transport and accumulation of virus in inoculated potato plants depends on variety resistance, combination of viruses and sequence of their application.     

Algorithm of Regulatory Signal Recognition in DNA Sequences

An algorithm is proposed for extracting regulatory signals from DNA sequences. The algorithm complexity is nearly quadratic. The results of testing the algorithm on artificial and natural sequences are presented.     

High levels of arbuscular mycorrhizal fungus colonization on Medicago truncatula reduces plant suitability as a host for pea aphids (Acyrthosiphon pisum)

This study sheds light on a poorly understood area in insect-plant-microbe interactions,focusing on aphid probing and feeding behavior on plants with varying levels of arbuscular mycorrhizal(AM)fungus root colonization.It investigates a commonly occurring interaction of three species:pea aphid Acyrthosiphon pisum,barrel medic Medicago truncatula,and the AM fungus Rhizophagus irregularis,examining whether aphid-feeding behavior changes when insects feed on plants at different levels of AM fungus colonization(42% and 84% root length colonized).Aphid probing and feeding behavior was monitored throughout 8 h of recording using the electrical penetration graph(EPG)technique,also,foliar nutrient content and plant growth were measured.Summarizing,aphids took longer to reach their 1st sustained phloem ingestion on the 84% AM plants than on the 42% AM plants or on controls.Less aphids showed phloem ingestion on the 84% AM plants relative to the 42% AM plants.Shoots of the 84% AM plants had higher percent carbon(43.7%)relative to controls(40.5%),and the 84% AM plants had reduced percent nitrogen(5.3%)relative to the 42% AM plants(6%).In conclusion,EPG and foliar nutrient data support the hypothesis that modifications in plant anatomy(e.g.,thicker leaves),and poor food quality(reduced nitrogen)in the 84% AM plants contribute to reduced aphid success in locating phloem and ultimately to differences in phloem sap ingestion.This work suggests that M.truncatula plants benefit from AM symbiosis not only because of increased nutrient uptake but also because of reduced susceptibility to aphids.     

Subset Selection Procedures for Randomized Designs

Starting from the principle that there exists a randomization procedure that assigns treatments to experimental units, four subset selection rules for the problem of selecting the best treatment from a set of different treatments are proposed. Two of these are extensions of already existing subset selection procedures, which were defined for unbalanced designs, and need a separate selection constant for each individual treatment. The other two rules proposed are new and need only one selection constant for all treatments. The various procedures are compared, and illustrated by application to a plant breeding variety trial.     

Searching for pharmacophoric patterns in databases of three-dimensional chemical structures

This paper provides an overview of the research that has been carried out in Sheffield over the last decade into searching techniques for databases of three-dimensional (3D) chemical structures. A 3D structure or query pattern is represented by a labelled graph, in which the nodes and the edges of the graph are used to represent atoms and the associated inter-atomic distances, respectively. The presence of a pharmacophore in each of the structures in a database can then be tested by means of a subgraph isomorphism algorithm, the computational requirements of which are minimized by the use of an initial screening procedure that eliminates the majority of the structures from the subgraph-isomorphism search. Analogous graph-based representation and searching methods can also be used with flexible 3D structures: in this case, the edges of the graphs represent inter-atomic distance ranges and a final conformational search needs to be carried out for those molecules that match the query pharmacophore in the subgraph-isomorphism search. The paper also reviews related work on the automatic identification of pharmacophoric patterns and on 3D similarity searching.     

A nexus of intrinsic dynamics underlies translocase priming

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水稻品种茎集散度分析及评价记载标准探讨

对578份广东省育成品种(系)和470份台湾品种(系)的茎集散度进行了分析,广东育成品种的茎集散度分布为3°～23°,96.37%集中分布在5°～17°;台湾品种茎集散度分布为3°～17°,97.02%集中分布在4°～12°.广东育成的代表性品种茎集散度为7°～16°.提出水稻理想株型最适茎集散度的计算公式:α=arcsin D/2H.建议籼稻栽培稻茎集散度的评价记载标准分为集、中、散3个等级:茎集散度≤5°为集;茎集散度6°～15°为中;茎集散度＞15°为散.     

A taxonomy of application scheduling tools for high performance cluster computing

Application scheduling plays an important role in high-performance cluster computing. Application scheduling can be classified as job scheduling and task scheduling. This paper presents a survey on the software tools for the graph-based scheduling on cluster systems with the focus on task scheduling. The tasks of a parallel or distributed application can be properly scheduled onto multi-processors in order to optimize the performance of the program (e.g., execution time or resource utilization). In general, scheduling algorithms are designed based on the notion of task graph that represents the relationship of parallel tasks. The scheduling algorithms map the nodes of a graph to the processors in order to minimize overall execution time. Although many scheduling algorithms have been proposed in the literature, surprisingly not many practical tools can be found in practical use. After discussing the fundamental scheduling techniques, we propose a framework and taxonomy for the scheduling tools on clusters. Using this framework, the features of existing scheduling tools are analyzed and compared. We also discuss the important issues in improving the usability of the scheduling tools. This work is supported by the Hong Kong Polytechnic University under grant H-ZJ80 and by NASA Ames Research Center by a cooperative grant agreement with the University of Texas at Arlington. Jiannong Cao received the BSc degree in computer science from Nanjing University, Nanjing, China in 1982, and the MSc and the Ph.D degrees in computer science from Washington State University, Pullman, WA, USA, in 1986 and 1990 respectively. He is currently an associate professor in Department of Computing at the Hong Kong Polytechnic University, Hong Kong. He is also the director of the Internet and Mobile Computing Lab in the department. He was on the faculty of computer science at James Cook University and University of Adelaide in Australia, and City University of Hong Kong. His research interests include parallel and distributed computing, networking, mobile computing, fault tolerance, and distributed software architecture and tools. He has published over 120 technical papers in the above areas. He has served as a member of editorial boards of several international journals, a reviewer for international journals/conference proceedings, and also as an organizing/programme committee member for many international conferences. Dr. Cao is a member of the IEEE Computer Society, the IEEE Communication Society, IEEE, and ACM. He is also a member of the IEEE Technical Committee on Distributed Processing, IEEE Technical Committee on Parallel Processing, IEEE Technical Committee on Fault Tolerant Computing, and Computer Architecture Professional Committee of the China Computer Federation. Alvin Chan is currently an assistant professor at the Hong Kong Polytechnic University. He graduated from the University of New South Wales with a Ph.D. degree in 1995 and was subsequently employed as a Research Scientist by the CSIRO, Australia. From 1997 to 1998, he was employed by the Centre for Wireless Communications, National University of Singapore as a Program Manager. Dr. Chan is one of the founding members and director of a university spin-off company, Information Access Technology Limited. He is an active consultant and has been providing consultancy services to both local and overseas companies. His research interests include mobile computing, context-aware computing and smart card applications. Yudong Sun received the B.S. and M.S. degrees from Shanghai Jiao Tong University, China. He received Ph.D. degree from the University of Hong Kong in 2002, all in computer science. From 1988 to 1996, he was among the teaching staff in Department of Computer Science and Engineering at Shanghai Jiao Tong University. From 2002 to 2003, he held a research position at the Hong Kong Polytechnic University. At present, he is a Research Associate in School of Computing Science at University of Newcastle upon Tyne, UK. His research interests include parallel and distributed computing, Web services, Grid computing, and bioinformatics. Sajal K. Das is currently a Professor of Computer Science and Engineering and the Founding Director of the Center for Research in Wireless Mobility and Networking (CReWMaN) at the University of Texas at Arlington. His current research interests include resource and mobility management in wireless networks, mobile and pervasive computing, sensor networks, mobile internet, parallel processing, and grid computing. He has published over 250 research papers, and holds four US patents in wireless mobile networks. He received the Best Paper Awards in ACM MobiCom’99, ICOIN-16, ACM, MSWiM’00 and ACM/IEEE PADS’97. Dr. Das serves on the Editorial Boards of IEEE Transactions on Mobile Computing, ACM/Kluwer Wireless Networks, Parallel Processing Letters, Journal of Parallel Algorithms and Applications. He served as General Chair of IEEE PerCom’04, IWDC’04, MASCOTS’02 ACM WoWMoM’00-02; General Vice Chair of IEEE PerCom’03, ACM MobiCom’00 and IEEE HiPC’00-01; Program Chair of IWDC’02, WoWMoM’98-99; TPC Vice Chair of ICPADS’02; and as TPC member of numerous IEEE and ACM conferences. Minyi Guo received his Ph.D. degree in information science from University of Tsukuba, Japan in 1998. From 1998 to 2000, Dr. Guo had been a research scientist of NEC Soft, Ltd. Japan. He is currently a professor at the Department of Computer Software, The University of Aizu, Japan. From 2001 to 2003, he was a visiting professor of Georgia State University, USA, Hong Kong Polytechnic University, Hong Kong. Dr. Guo has served as general chair, program committee or organizing committee chair for many international conferences, and delivered more than 20 invited talks in USA, Australia, China, and Japan. He is the editor-in-chief of the Journal of Embedded Systems. He is also in editorial board of International Journal of High Performance Computing and Networking, Journal of Embedded Computing, Journal of Parallel and Distributed Scientific and Engineering Computing, and International Journal of Computer and Applications. Dr. Guo’s research interests include parallel and distributed processing, parallelizing compilers, data parallel languages, data mining, molecular computing and software engineering. He is a member of the ACM, IEEE, IEEE Computer Society, and IEICE. He is listed in Marquis Who’s Who in Science and Engineering.     

暗腹雪鸡与海兰褐鸡血液生理生化指标的比较

为了解暗腹雪鸡（Tetraogallus himalayensis）正常血液生理生化特性,本文对暗腹雪鸡21项血液生理生化指标进行了测定,并与海兰褐鸡（Gallus gallus domesticus var. Hyline）进行了比较。测定结果,暗腹雪鸡的红细胞纵径及横纵径乘积、平均红细胞容积及平均红细胞血红蛋白含量极显著大于海兰褐鸡（P<0.01）;暗腹雪鸡天冬氨酸氨基转移酶和胆固醇含量均极显著高于海兰褐鸡（P<0.01）。其他各项血液生理生化指标两禽种间之间差异不显著。实验结果表明,暗腹雪鸡血液生理生化指标与家养蛋鸡之间有一定差异,暗腹雪鸡对高原低氧环境有较强的适应性可能与其红细胞体积较大、平均红细胞容积及平均红细胞血红蛋白含量较高有一定关系。     

Feeding behaviour and performance of different populations of the black currant‐lettuce aphid,Nasonovia ribisnigri,on resistant and susceptible lettuce

When crops are bred for resistance to herbivores, these herbivores are under strong selection pressure to overcome this resistance, which may result in the emergence of virulent biotypes. This is a growing problem for crop species attacked by aphids. The Nr‐gene in lettuce confers near‐complete resistance against the black currant‐lettuce aphid, Nasonovia ribisnigri (Mosely) (Hemiptera: Aphididae). Since 2007, populations of N. ribisnigri have been reported in several locations in Europe to infest resistant lettuce varieties that possess the Nr‐gene. The objective of this study was to analyse the behaviour and level of virulence of several N. ribisnigri populations observed to have colonized Nr‐locus‐containing lettuce lines. We analysed the stylet penetration and feeding behaviour, and the performance of these N. ribisnigri populations on resistant and susceptible lettuce lines. Large variation in the degree of virulence to the Nr‐locus‐containing lettuce lines was found among populations of the Nr:1 biotype. The German population was highly virulent on the Nr‐containing resistant lettuce lines, and showed similar feeding behaviour and performance on both the susceptible and resistant lettuces. The French population from Paris was the second most virulent, though reproduction on the resistant lines was reduced. The French population from Perpignan and a population from Belgium, however, showed reduced performance and feeding rate on the resistant compared to the susceptible lettuces. The lettuce background in which the Nr‐gene is expressed influences the level of resistance to the various Nr:1 aphid populations, because the performance and feeding behaviour differed between the aphids on the cultivars (romaine lettuce) compared to the near‐isogenic lines (butterhead/iceberg lettuce). This study also shows that being able to feed on a plant not automatically implies that a population can successfully develop on that plant, because aphids showed phloem ingestion during the 8‐h recording period on resistant lettuce, but were not able to survive and reproduce on the same lettuce line.